Index

_

__init__() (vcfparser.record_parser.Alleles method) (vcfparser.record_parser.GenotypeVal method) (vcfparser.record_parser.Record method) (vcfparser.vcf_parser.VcfParser method)

A

add_contig() (vcfparser.vcf_writer.VCFWriter method) add_filter() (vcfparser.vcf_writer.VCFWriter method) add_filter_long() (vcfparser.vcf_writer.VCFWriter method) add_format() (vcfparser.vcf_writer.VCFWriter method)

add_header_line() (vcfparser.vcf_writer.VCFWriter method) add_info() (vcfparser.vcf_writer.VCFWriter method) add_normal_metadata() (vcfparser.vcf_writer.VCFWriter method) add_record_value() (vcfparser.vcf_writer.VCFWriter method) Alleles (class in vcfparser.record_parser)

D

deletion_overlapping_variant() (vcfparser.record_parser.Record method)

G

GenotypeVal (class in vcfparser.record_parser) get_format_to_sample_map() (vcfparser.record_parser.Record method) get_full_record_map() (vcfparser.record_parser.Record method)

get_info_as_dict() (vcfparser.record_parser.Record method) get_mapped_tag_list() (vcfparser.record_parser.Record method) get_tag_values_from_samples() (vcfparser.record_parser.Record static method)

H

has_phased() (vcfparser.record_parser.Record method) has_unphased() (vcfparser.record_parser.Record method) hasAllele() (vcfparser.record_parser.Record method)

hasINDEL() (vcfparser.record_parser.Record method) hasnoVAR() (vcfparser.record_parser.Record method) hasSNP() (vcfparser.record_parser.Record method) hasVAR() (vcfparser.record_parser.Record method)

I

isHETVAR() (vcfparser.record_parser.Record method) isHOMREF() (vcfparser.record_parser.Record method)

isHOMVAR() (vcfparser.record_parser.Record method) isMissing() (vcfparser.record_parser.Record method) iupac_to_numeric() (vcfparser.record_parser.Record method)

M

mapped_rec_to_str() (vcfparser.record_parser.Record method)

MetaDataParser (class in vcfparser.meta_header_parser) MetaDataViewer (class in vcfparser.metaviewer)

O

obj_to_dict() (in module vcfparser.metaviewer)

P

parse_lines() (vcfparser.meta_header_parser.MetaDataParser method) parse_metadata() (vcfparser.vcf_parser.VcfParser method), [1]

parse_records() (vcfparser.vcf_parser.VcfParser method), [1] print_requested_metadata() (vcfparser.metaviewer.MetaDataViewer method)

R

Record (class in vcfparser.record_parser)

S

save_as_json() (vcfparser.metaviewer.MetaDataViewer method) save_as_orderdict() (vcfparser.metaviewer.MetaDataViewer method)

save_as_table() (vcfparser.metaviewer.MetaDataViewer method) split_genotype_tags() (vcfparser.record_parser.Record static method) split_to_dict() (in module vcfparser.meta_header_parser)

U

unmap_fmt_samples_dict() (vcfparser.record_parser.Record method)

unpack_str() (in module vcfparser.metaviewer)

V

VcfParser (class in vcfparser.vcf_parser) vcfparser (module) vcfparser.meta_header_parser (module) vcfparser.metaviewer (module)

vcfparser.record_parser (module) vcfparser.vcf_parser (module) vcfparser.vcf_writer (module) VCFWriter (class in vcfparser.vcf_writer)